Marine Science and Limnology
MSL 111X 4
Credits
The Oceans (n)
Study of the oceans from the broad perspective offered by
combining insights from biology, physics, chemistry and geology. Topics include
the evolution of the oceans and marine life, forces acting on water and the
resulting currents and waves, and relationships between the physics and
chemistry of water bodies and their biological productivity. Societal questions
related to fisheries management, global climate change and pollution will be
discussed. (3 + 3) Offered Juneau Alternate Fall; Offered Fairbanks
Fall, Spring
MSL 411 3
Credits
Current Topics in Oceanographic Research
Study of research problems from biology, chemistry, geology
and physics. Topics include sea floor hydrothermal vents and their indigenous
communities, manganese nodules, tsunami prediction, radioisotopes in the sea,
Bering Sea productivity, and the role of the ocean in global warming due to
fossil fuel carbon dioxide. (Prerequisites: Four semesters of natural sciences
at 100-level or above or permission of instructor.) (3 + 0) Offered
Juneau As Demand Warrants; Offered Fairbanks Alternate Fall
MSL 420 2
Credits
Scientific Diving
Introduction to SCUBA diving techniques used by the research
community. Includes familiarization with Alaska subtidal flora and fauna.
Opportunity to work under water and assist with diving projects conducted by
advanced diving students at the Kasitsna Bay Marine Lab. Course certifies a
Research Diver Specialty (PADI), CPR and first aid (Red Cross) and Emergency
Oxygen Administration (DAN). Completion of this course allows students to be
eligible to join the UAF (AAUS) dive program and to dive on UAF sanctioned
diving projects, and have reciprocity to dive with other university and
government agencies. Materials fee: $425. (Prerequisite: SCUBA open-water
certification; and basic biology or ecology courses. Special condition: Must
have current SCUBA physical approved. Graded Pass/Fail.)
(1 + 1 + 8) Offered Spring
MSL 421 2
Credits
Advanced Scientific Diving
(Stacked with MSL 623)
Propose a hypothesis and experimentally test it during a
one-week field trip to the Kasitsna Bay Marine Lab. Develop a proposal, dive
plan and materials list in relation to the hypothesis. Undergraduates will
present their findings in a poster or oral presentation while graduate students
will present theirs in a public seminar. Materials fee: $175.
(Prerequisite: SCUBA open-water certification; MSL 420; and basic biology or
ecology courses. Special condition: Must have current SCUBA physical approved.)
(1 + 1 + 8) Offered Spring
MSL 435 3
Credits
Acoustical Oceanography
Principles and applications of underwater sound in solving
oceanographic problems related to chemistry, physics, geology and biology,
including hydroacoustical methods, acoustical phenomena, bioacoustics and
fisheries acoustics, environmental noise and signal processing. (Prerequisites:
College physics and calculus.) (3 + 0) Offered Alternate Fall
MSL 450 4
Credits
Marine Biology and Ecology Field Course
(Stacked with MSL 651)
Advanced understanding of marine organisms in an ecological
and evolutionary context through field and laboratory work at the Kasitsna Bay
Marine Lab. Includes collection of marine macroalgae, invertebrates and
plankton and relating their anatomical organization to habitat, lifestyle and
ecology. Emphasis on familiarization with Alaska's nearshore flora and fauna,
the ecological function of organisms and ecosystem dynamics. Includes employing
different field sampling techniques and experimental designs in various
habitats found around the Kasitsna Bay Marine Lab, e.g. rocky intertidal, open
water, mudflats, seagrass beds and salt marshes. (Prerequisites: One year of
biology and permission of instructor. Basic courses in ecology and invertebrate
zoology recommended.) (3 + 6) Offered Alternate Summer, As Demand
Warrants
MSL 456 4
Credits
Kelp Forest Ecology
(Stacked with MSL 656)
Introduction to knowledge, hypotheses and disputes regarding
components of nearshore tidal communities and the ecological interactions that
influence their structure and dynamics. Includes primary published literature
in marine subtidal ecology, and local Alaska subtidal flora and fauna. Work
underwater doing ecological research. Includes formulating questions,
collecting and analyzing ecological data, report writing and feedback. Course
fee: $450. (Prerequisites: UAF Science Diver certification.) Offered Alternate
Summer, As Demand Warrants
MSL 460 1-3 Credits
Marine Studies for Science Teachers
Field studies in oceanography and marine biology emphasizing
a hands-on approach to scientific observation, data collection and analysis.
Small boat and beach excursions. Students may enroll for one, two, or three
weeks at 1 credit per week. Two additional credits may be earned by students
concurrently enrolled in MSL 498 and completing their own investigative
research project. Course offered at the Kasitsna Bay Laboratory.
(Prerequisites: B.S. or B.A. degree and college-level science background or
permission of instructor(s).) Offered Alternate Summer, As Demand Warrants
MSL 467 3
Credits
Introduction to Marine Macroalgae (n)
(Stacked with MSL 667)
Introduction to marine macroalgae. Includes algal structure,
function and ecology, basic knowledge of the major phyla, key and press algae,
and local Alaska flora. Includes 4-5 day field trip to UAF's Kasitsna Bay
Marine Laboratory. Materials fee: $50. (Prerequisite: Upper-division standing
in a natural science.) (2 + 3) Offered As Demand Warrants
MSL 610 3
Credits
Marine Biology
A study of the biology of the major plant and animal groups
in the sea and their roles in pelagic and benthic systems. Physical, chemical
and geological features affecting marine organisms. The role of bacteria in the
sea. The basic biology and adaptations of selected species of zooplankton and
nekton. The benthos—shore biota, shelf and deep-sea organisms: basic
biology, trophic roles and adaptations of selected species. (Prerequisites:
Degree in biology or permission of instructor. Highly recommended: courses in
invertebrate zoology, ichthyology, vertebrate zoology.) (3 + 0)
Offered Spring
MSL 611 5
Credits
Field Problems in Marine Biology
Study of pelagic and benthic ecosystems emphasizing
distribution, abundance and ecology of dominant species. Students will also complete
a research project of their own choosing. Five-week course offered at the
Kasitsna Bay Laboratory. (Prerequisites: Graduate standing or permission of
instructor; invertebrate zoology or equivalent.) (0 + arranged)
Offered Alternate Summer, As Demand Warrants
MSL 615 3
Credits
Physiology of Marine Organisms
A study of the physiological systems of and adaptation to the
marine environment, intertidal, pelagic and deep benthos environment and energy
flows will be discussed. (Prerequisite: Graduate standing or permission of
instructor.) (3 + 0) Offered Alternate Fall
MSL 616 3
Credits
Metabolic Physiology
Interates organismal and cellular aspects of vertebrate
metabolism, thus representing an amalgam of biochemistry, cellular physiology
and comparative animal physiology. Detail and intensity devoted to the various
topics of metabolism will be tailored to the research interests of the students
enrolled. (Recommended: Undergraduate course in biochemistry, and physiology or
cellular biology.) (3 + 0) Offered Spring
MSL 617 3
Credits
Marine Mammal Management
Examination of a practical current issues related to marine
mammals in Alaska and throughout the world. Review of the legal agreements
affecting marine mammals such as the U.S. Marine Mammal Protection Act, the
Endangered species Act, the Convention on International Trade in Endangered
Species, the Magnuson-Stevens Fisheries Conservation Act, and the history and
actions of such groups as the International Waling Commission. Includes
discussion of current mammal management policies in the U.S. and throughout the
world. Other issues explored in relation to marine mammals: contaminants,
habitat, interactions with fisheries and subsistence hunting. (Recommended:
Courses in genetics, populations dynamics, and general ecology. Next offered:
2006-07.) (3 + 0) Offered Alternate Spring
MSL 619 3
Credits
Biology of Marine Mammals
This course is intended to provide a graduate-level
introduction to a broad range of research and conservation topics associated
with marine mammals. Topics include physiological adaptations, phylogeny and
evolution, behavior, ecology, population dynamics and conservation.
(Prerequisites: Graduate standing; or upper-division ecology and biology
courses. Next offered: 2006-07.) (3 + 0) Offered Alternate Spring
MSL 620 4
Credits
Physical Oceanography
Physical description of the sea, physical properties of sea
water, methods and measurements, boundary processes, currents, tides and waves,
and regional oceanography. (Prerequisite: Math 202X, PHYS 103X or PHYS 211X,
science or engineering degree, or permission of instructor.) (3 + 3)
Offered Fall
MSL 621 3
Credits
Polar Marine Science
Physical, biological, chemical and geological oceanography of
the polar oceans with emphasis on comparing
and contrasting the Arctic and Antarctic. (Prerequisites: MSL 620, 630, 650,
660, or concurrent enrollment, or permission of instructor. Next offered:
2006-07.) (3 + 0) Offered Alternate Fall
MSL 623 2 Credits
Advanced Scientific
Diving
(Stacked with MSL 421)
Propose a hypothesis and experimentally test it during a
one-week field trip to the Kasitsna Bay Marine Lab. Develop a proposal, dive
plan and materials list in relation to the hypothesis. Undergraduates will
present their findings in a poster or oral presentation while graduate students
will present theirs in a public seminar. Materials fee: $175.
(Prerequisite: SCUBA open-water certification; MSL 420; and basic biology or
ecology courses. Special condition: Must have current SCUBA physical approved.)
(1 + 1 + 8) Offered Spring
MSL 625 3
Credits
Shipboard Techniques
A comprehensive introduction to modern oceanographic
shipboard sampling and analysis techniques. (2 + 3) Offered Spring
MSL 629 4
Credits
Methods of Numerical Simulation in Geophysical Fluid
Dynamics
Fundamentals of computer simulation, including time and
spatial differencing and stability theory applied to partial differential
equations describing dynamic processes in the ocean and atmosphere. Numerical
approximation schemes for the geophysical fluid dynamics will be analyzed
through equations of motion, continuity and transport. Special consideration
given to the description of the frictional processes in the turbulent flow and
transport/diffusion phenomena. Includes laboratory practice. (Prerequisites:
MATH 310, 421, 422 or equivalent; baccalaureate degree in physics, engineering,
mathematics or equivalent; experience with FORTRAN. Next offered: 2007-08.)
(3 + 3) Offered Alternate Fall
MSL 630 3
Credits
Geological Oceanography
Topography and structure of the ocean floor. Theory of plate
tectonics. Geology of ocean basins, continental slope, shelf and coastal
environments. Major sediment types and distributions. Sediment transport and
deposition. Paleoceanography. (Prerequisite: Introductory college geology or
permission of instructor.) (3 + 0) Offered Spring
MSL 640 4
Credits
Fisheries Oceanography
Oceanography of marine processes affecting commercially
important fisheries (finfish and shellfish) and species that affect them.
Interactions between fisheries resources and physical, biological, geological
and chemical oceanography, as well as climatological, and meteorological
conditions. Topics include recruitment, transport, natural mortality, predator-prey
relationships, competition, distribution and abundance, El Niño/La Niña, regime
shifts, and climate change. Emphasis is on early life history of fishes. Examples
from fisheries and ecosystems worldwide are used. (Prerequisite: MSL 650 or
permission of instructor; recommended FISH 400,O/2.) (4 + 0) Offered
Alternate Spring
MSL 650 3
Credits
Biological Oceanography
A survey of biological processes emphasizing organic matter
synthesis and transfer including topics essential to a basic understanding of
contemporary biological oceanography. Primary and secondary production,
standing stocks, distribution, and structure and dynamics of phytoplankton and
zooplankton populations. The transfer of organic matter to higher trophic
levels, food webs, nutrient cycling, especially but not exclusively nitrogen,
phosphorus and silicon, microbiological process relevant to nutrient cycling,
and heterotrophic production, benthic communities coastal ecosystems, the
influence of organisms on the composition of seawater, particularly with
reference to oxygen and carbon dioxide regimes. Aspects of regional
oceanography. (Prerequisites: Upper-division standing in a science major.)
(3 + 0) Offered Fall
MSL 651 4
Credits
Marine Biology and Ecology Field Course
(Stacked with MSL 450)
Advanced understanding of marine organisms in an ecological
and evolutionary context through field and laboratory work at the Kasitsna Bay
Marine Lab. Includes collection of marine macroalgae, invertebrates and
plankton and relating their anatomical organization to habitat, lifestyle and
ecology. Emphasis on familiarization with Alaska's nearshore flora and fauna,
the ecological function of organisms and ecosystem dynamics. Includes employing
different field sampling techniques and experimental designs in various
habitats found around the Kasitsna Bay Marine Lab, e.g. rocky intertidal, open
water, mudflats, seagrass beds and salt marshes. Graduate students perform a
research project related to course subject matter. (Prerequisites: Graduate standing,
one year of biology and permission of instructor. Basic courses in ecology and
invertebrate zoology recommended.) (3 + 6) Offered Alternate Summer,
As Demand Warrants
MSL 652 3
Credits
Marine Ecosystems
Understanding ecosystems of the sea in the context of
evaluating the impact of human activities. The course focuses on current
concepts, trends and perspectives rather than being a survey. (Prerequisites:
BIOL 472W, MSL 650, and MSL 620 or permission of instructor; Next offered:
2006-07.) (3 + 0) Offered Alternate Spring
MSL 653-J 3
Credits
Zooplankton Ecology
(Cross-listed with FISH 653-J)
Survey of marine zooplankton including processes and
variables which influence their production and dynamics. Emphasis on the
northeast Pacific ocean zooplankton community. Field and lab methods for
sampling include fixing, preserving, subsampling, identifying and quantifying
zooplankton collections. Laboratory techniques for culture of zooplankton
include physiological measurements of bioenergetic parameters. (Prerequisites:
invertebrate zoology course, MSL 610, or permission of instructor.)
(3 + 0) Offered Alternate Spring
MSL 654-J 3
Credits
Benthic Ecology
(Cross-listed with FISH 654-J)
Ecology of marine benthos, from subtidal to hadal zone.
Methods of collecting, sorting, narcotizing, preserving and analyzing benthic
assemblages, including video analytical techniques from submersibles and ROV's.
Hydrothermal vent and cold seep assemblages. Physiology/energetics of benthic
organisms, including animal-sediment relationships, feeding, reproduction and
growth. Depth, spatial and latitudinal distribution patterns. (Prerequisites:
Invertebrate zoology course, marine biology course, or permission of
instructor. Next offered: 2006-07.) (3 + 0) Offered Alternate
Spring
MSL 655 2
Credits
Phytoplankton Ecology From Form to Function
Introduces the diversity and functioning of aquatic (marine
and limnic) phytoplankton taxa in a wide sense. Topics include various
adaptations to the environment (life cycles, physiology). Four lab sessions (1
hour lecture and 2 hours lab) will intensify the understanding of the topics,
providing hands-on experience in analyzing phytoplankton samples on algal
diversity and activity using modern techniques (fluorescence microscopy, flow
cytometry and PAM fluorometry. (Prerequisites: MSL 650; and/or graduate courses
in algal ecology and aquatic ecosystems; Next offered: 2007-08.) Offered
Alternate Spring
MSL 656 4
Credits
Kelp Forest Ecology
(Stacked with MSL 456)
Introduction to knowledge,
hypotheses and disputes regarding components of nearshore tidal communities and
the ecological interactions that influence their structure and dynamics.
Includes primary published literature in marine subtidal ecology, and local
Alaska subtidal flora and fauna. Work underwater doing ecological research.
Includes formulating questions, collecting and analyzing ecological data,
report writing and feedback. Course fee: $450. (Prerequisites: UAF Science
Diver certification.) Offered Alternate Summer, As Demand Warrants
MSL 660 3
Credits
Chemical Oceanography
(Cross-listed with CHEM 660)
An integrated study of the chemical, biological and physical
processes that determine the distribution of chemical variables in the sea. The
distribution of stable and radioisotopes are used to follow complex chemical
cycles, with particular emphasis on the cycles of nutrient elements. The
chemistry of carbon is considered in detail. The implications of the recently
explored mid-ocean ridge vent system to ocean chemistry are examined.
(Prerequisite: Graduate standing or permission of instructor.)
(3 + 0) Offered Spring
MSL 661 3
Credits
Stable Isotope Techniques in Environmental Research
An examination of the use of added or naturally occurring
isotope tracers in ecological studies. Demonstration of equipment and modern
techniques. (Prerequisite: MSL 660 or permission of instructor. Next offered:
2007-08.) (3 + 0) Offered Alternate Spring
MSL 667 3
Credits
Introduction to Marine Macroalgae
(Stacked with MSL 467)
Introduction to marine macroalgae. Includes algal structure,
function and ecology, basic knowledge of the major phyla, key and press algae,
and local Alaska flora. Includes 4-5 day field trip to UAF's Kasitsna Bay
Marine Laboratory. Materials fee: $50. (Prerequisite: Graduate standing.)
(2 + 3) Offered As Demand Warrants
MSL 670 2
Credits
Nutrient Dynamics
The dynamics of nitrogen, phosphorus and silicon cycles of
the world oceans and the specific processes which transfer nutrients between
ecosystems compartments will be studied. Analytical techniques employed in
measurement of nutrient transfer rates will also be studied. (Prerequisites:
MSL 660 or 650 or permission of instructor. Next offered: 2007-08.)
(2 + 0) Offered Alternate Fall